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Selected publications utilizing equipment from PyroScience

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2017

Regulation of benthic oxygen fluxes in permeable sediments of the coastal ocean
Ahmerkamp et al. 2017, Limnology and Oceanography
https://doi.org/10.1002/lno.10544

Inside Story of Gas Processes within Stormwater Biofilters: Does Greenhouse Gas Production Tarnish the Benefits of Nitrogen Removal?
Payne et al., 2017, Environmental Science & Technology
http://dx.doi.org/10.1021/acs.est.6b05653

Effect of solids on O2 mass transfer in an oscillatory flow reactor provided with smooth periodic constrictions
Ferreira et al., 2017, Chemical Engineering Science
http://dx.doi.org/10.1016/j.ces.2016.12.067

Characterization of the Oxygen Transmission Rate of Oak Wood Species Used in Cooperage
Alamo-Sanza et al., 2017, Journal of Agricultural and Food Chemistry
http://dx.doi.org/10.1021/acs.jafc.6b05188

Impacts of ocean acidification on sperm develop with exposure time for a polychaete with long lived sperm
Campbell et al., 2017, Marine Environmental Research
http://dx.doi.org/10.1016/j.marenvres.2017.06.011   

Abiotic influences on bicarbonate use in the giant kelp, Macrocystis pyrifera, in the Monterey Bay
Drobnitch et al., 2017, Journal of Phycology
https://doi.org/10.1111/jpy.12480

Transient exposure to oxygen or nitrate reveals ecophysiology of fermentative and sulfate-reducing benthic microbial populations
Saad et al., 2017, Environmental Microbiology
https://doi.org/10.1111/1462-2920.13895 

Carbon Bioavailability in a High Arctic Fjord Influenced by Glacial Meltwater, NE Greenland
Paulsen et al., 2017, Frontiers in Marine Science
https://doi.org/10.3389/fmars.2017.00176

Naphthalene biodegradation under oxygen-limiting conditions: community dynamics and the relevance of biofilm-forming capacity
Abercron et al., 2017, Microbial Biotechnology
https://dx.doi.org/10.1111/1751-7915.12842 

Sediment Resuspension and Deposition on Seagrass Leaves Impedes Internal Plant Aeration and Promotes Phytotoxic H2S Intrusion
Brodersen et al., 2017, Frontiers in Plant Science
https://dx.doi.org/10.3389%2Ffpls.2017.00657

Flood tolerance of wheat – the importance of leaf gas films during complete submergence
Winkel et al., 2017, Functional Plant Biology
https://doi.org/10.1071/FP16395

Implications of ocean acidification in the Pacific Arctic: Experimental responses of three Arctic bivalves to decreased pH and food availability
Goethel et al., 2017, Deep Sea Research Part II: Topical Studies in Oceanography
https://doi.org/10.1016/j.dsr2.2017.08.013

Role of sulphide reduction by magnesium hydroxide on the sediment of the eutrophic closed bay
Xia et al., 2017, Aquaculture Research
https://doi.org/10.1111/are.13477  

The neuroprotective steroid progesterone promotes mitochondrial uncoupling, reduces cytosolic calcium and augments stress resistance in yeast cells
Stekovic et al., 2017, Microbial Cell
https://dx.doi.org/10.15698%2Fmic2017.06.577

Temporal and spatial activity-associated energy partitioning in free-swimming sea snakes
Udyawer et al., 2017, Functional Ecology
https://doi.org/10.1111/1365-2435.12882 

A mutant of Chlamydomonas without LHCSR maintains high rates of photosynthesis, but has reduced cell division rates in sinusoidal light conditions
Cantrell and Peers, 2017, PLOS One
https://doi.org/10.1371/journal.pone.0179395

Cellular respiration, oxygen consumption, and trade-offs of the jellyfish Cassiopea sp. in response to temperature change
Al-jbour et al., 2017, Journal of Sea Research
https://doi.org/10.1016/j.seares.2017.08.006

Increased mitochondrial coupling and anaerobic capacity minimizes aerobic costs of trout in the sea
Brijs et al., 2017, Scientific Reports
https://doi.org/10.1038/srep45778 

Estimation of net ecosystem metabolism of seagrass meadows in the coastal waters of the East Sea and Black Sea using the noninvasive eddy covariance technique
Lee et al., 2017, Ocean Science Journal
https://dx.doi.org/10.1007/s12601-017-0032-5

Effect of biochar on anaerobic degradation of pentabromodiphenyl ether (BDE-99) by archaea during natural groundwater recharge with treated municipal wastewater
Yan et al., 2017, International Biodeterioration & Biodegradation
https://doi.org/10.1016/j.ibiod.2017.04.019

Response of CO2-starved diatom Phaeodactylum tricornutum to light intensity transition
Heydarizadeh et al., 2017, Philosophical Transactions of the Royal Society B
https://doi.org/10.1098/rstb.2016.0396    

Hypoxia exposure and B-type natriuretic peptide release from Langendorff heart of rats
Anttila et al., 2017, Acta Physiologica
https://doi.org/10.1111/apha.12767 

Conversion of Furans by Baeyer-Villiger Monooxygenases
Kumar and Fraaije, 2017, Catalysts
http://dx.doi.org/10.3390/catal7060179

Elevated temperature and acclimation time affect metabolic performance in the heavily exploited Nile perch of Lake Victoria
Nyboer and Chapman, 2017, Journal of Experimental Biology
https://doi.org/10.1242/jeb.163022

Chronic warm exposure impairs growth performance and reduces thermal safety margins in the common triplefin fish (Forsterygion lapillum)
McArley et al., 2017, Journal of Experimental Biology
https://doi.org/10.1242/jeb.162099 

Developmental Hypoxia Has Negligible Effects on Long-Term Hypoxia Tolerance and Aerobic Metabolism of Atlantic Salmon (Salmo salar)
Wood et al., 2017, Physiological and Biochemical Zoology
https://doi.org/10.1086/692250

Xeromorphic traits help to maintain photosynthesis in the perhumid climate of a Taiwanese cloud forest
Pariyar et al., 2017, Oecologia
https://doi.org/10.1007/s00442-017-3894-4

An integrated network analysis identifies how ArcAB enables metabolic oscillations in the nitric oxide detoxification network of Escherichia coli
Sacco et al., 2017, Biotechnology Journal
https://doi.org/10.1002/biot.201600570

Profound afternoon depression of ecosystem production and nighttime decline of respiration in a macrophyte-rich, shallow lake
Kragh et al., 2017, Oecologia
https://doi.org/10.1007/s00442-017-3931-3

Novel Pelagic Iron-Oxidizing Zetaproteobacteria from the Chesapeake Bay Oxic–Anoxic Transition Zone
Chiu et al., 2017, Frontiers in Microbiology
DOI: 10.3389/fmicb.2017.01280

Sediment resuspension effects on dissolved organic carbon fluxes and microbial metabolic potentials in reservoirs
Dadi et al., 2017, Aquatic Sciences
https://doi.org/10.1007/s00027-017-0533-4

Clownfish in hypoxic anemones replenish host O2 at only localised scales
Herbert et al., 2017, Scientific Reports
DOI: 10.1038/s41598-017-06695-x 

Global warming may disproportionately affect larger adults in a predatory coral reef fish
Messmer et al., 2017, Global Change Biology
https://doi.org/10.1111/gcb.13552 

Relationship between oxygen concentration, respiration and filtration rate in blue mussel Mytilus edulis
Tang and Riisgård, 2017, Chinese Journal of Oceanology and Limnology
http://dx.doi.org/10.1007/s00343-018-6244-4

Effects of hypoxia and ocean acidification on the upper thermal niche boundaries of coral reef fishes
Ern et al., 2017, The Royal Society Biology Letters
https://dx.doi.org/10.1098/rsbl.2017.0135

Response-surface fits and calibration transfer for the correction of the oxygen effect in the quantification of carbon dioxide via FTIR spectroscopy
Seichter et al., 2017, Analytica Chimica Acta
https://doi.org/10.1016/j.aca.2017.03.053

Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics
Hamilton et al., 2017, PLOS One
http://dx.doi.org/10.1371/journal.pone.0169670  

Real-time in-situ Simultaneous Monitoring of Dissolved Oxygen and Materials Movements at a Vicinity of Micrometers from an Aquatic Plant by Combining Deflection of a Probe Beam and Fluorescence Quenching
Wu et al., 2017, Analytical Sciences
http://doi.org/10.2116/analsci.33.351          

Thermal stress effects on energy resource allocation and oxygen consumption rate in the juvenile sea cucumber, Holothuria scabra (Jaeger, 1833)
Kühnhold et al., 2017, Aquaculture
http://doi.org/10.1016/j.aquaculture.2016.03.018

Quantitating active photosystem II reaction center content from fluorescence induction transients
Murphy et al., 2017, Limnology and Oceanography Methods
http://doi.org/10.1002/lom3.10142   

Discovery of a resting stage in the harmful, brown-tide-causing pelagophyte, Aureoumbra lagunensis: a mechanism potentially facilitating recurrent blooms and geographic expansion
Kang et al., 2017, Journal of Phycology
http://doi.org/10.1111/jpy.12485

Swimming speeds and metabolic rates of semi-captive juvenile lemon sharks (Negaprion brevirostris, Poey) estimated with acceleration biologgers
Bouyoucos et al., 2017, Journal of Experimental Marine Biology and Ecology
http://doi.org/10.1016/j.jembe.2016.10.019

Paradoxical Inhibition of Glycolysis by Pioglitazone Opposes the Mitochondriopathy Caused by AIF Deficiency
Bénit et al., 2017, EBioMedicine
http://doi.org/10.1016/j.ebiom.2017.02.013

Co-existence with non-native brook trout breaks down the integration of phenotypic traits in brown trout parr
Závorka et al., 2017, Functional Ecology
http://doi.org/10.1111/1365-2435.12862  

Copepod swimming behavior, respiration, and expression of stress-related genes in response to high stocking densities
Nilsson et al., 2017, Aquaculture Reports
http://doi.org/10.1016/j.aqrep.2017.03.001

Oxygen dynamics in shelf seas sediments incorporating seasonal variability
Hicks et al., 2017, Biogeochemistry, https://doi.org/10.1007/s10533-017-0326-9

Encystment of parasitic freshwater pearl mussel (Margaritifera margaritifera) larvae coincides with increased metabolic rate and haematocrit in juvenile brown trout (Salmo trutta)
Filipsson et al., 2017, Parasitology Research
https://doi.org/10.1007/s00436-017-5413-2

Rapid and recoverable in vivo magnetic resonance imaging of the adult zebrafish at 7T
Merrifield et al., 2017, Magnetic Resonance Imaging
http://doi.org/10.1016/j.mri.2016.10.013

Rising temperatures may drive fishing-induced selection of low-performance phenotypes
Clark et al., 2017, Scientific Reports
https://www.nature.com/articles/srep40571

Do low oxygen environments facilitate marine invasions? Relative tolerance of native and invasive species to low oxygen conditions
Lagos et al., 2017, Global Change Biology
http://doi.org/10.1111/gcb.13668    

High risk no gain-metabolic performance of hatchery reared Atlantic salmon smolts, effects of nest emergence time, hypoxia avoidance behaviour and size
Rosengren et al., 2017, Physiology & Behavior
http://doi.org/10.1016/j.physbeh.2017.03.028

Metabolic rates are elevated and influenced by maternal identity during the early, yolk-dependent, post-hatching period in an estuarine turtle, the diamondback terrapin (Malaclemys terrapin)
Rowe et al., 2017, Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology
http://doi.org/10.1016/j.cbpa.2016.11.015

Arctic Micromonas uses protein pools and non-photochemical quenching to cope with temperature restrictions on Photosystem II protein turnover
Ni et al., 2017, Photosynthesis Research
https://doi.org/10.1007/s11120-016-0310-6

Respiration Rates of Larval Cope's Gray Tree Frogs (Hyla chrysoscelis) Across a Range in Temperatures
Rowe and Funck, 2017, Journal of Herpetology
http://dx.doi.org/10.1670/16-029  

The physiological costs of prey switching reinforce foraging specialization
Hooker et al., 2017, Journal of Animal Ecology
https://doi.org/10.1111/1365-2656.12632

Annual variability and regulation of methane and sulfate fluxes in Baltic Sea estuarine sediments
Sawicka et al., 2017, Biogeosciences
https://doi.org/10.5194/bg-14-325-2017

Response of Bacterial Communities to Different Detritus Compositions in Arctic Deep-Sea Sediments
Hoffmann et al., 2017, Frontiers in Microbiology
https://doi.org/10.3389/fmicb.2017.00266

Synergistically enhanced oxygen reduction activity of iron-based nanoshell carbons by copper incorporation
Ishii et al., 2017, Carbon
http://doi.org/10.1016/j.carbon.2017.02.035

Role of Cyclooxygenase-2 on Intermittent Hypoxia-Induced Lung Tumor Malignancy in a Mouse Model of Sleep Apnea
Campillo et al., 2017, Scientific Reports
http://dx.doi.org/10.1038/srep44693            

The influence of ration size on energetics and nitrogen retention in tilapia (Oreochromis niloticus)
Skov et al., 2017, Aquaculture
http://doi.org/10.1016/j.aquaculture.2017.02.007

Pseudomonas aeruginosa Aggregate Formation in an Alginate Bead Model System Exhibits In Vivo-Like Characteristics
Sønderholm et al., 2017, Applied and Environmental Microbiology
https://doi.org/10.1128/AEM.00113-17

Dynamic changes in cardiac mitochondrial metabolism during warm acclimation in rainbow trout
Pichaud et al., 2017, Journal of Experimental Biology
https://doi.org/10.1242/jeb.152421

Nonlinear calibration transfer based on hierarchical Bayesian models and Lagrange Multipliers: Error bounds of estimates via Monte Carlo – Markov Chain sampling
Seichter et al., 2017, Analytica Chimica Acta
http://dx.doi.org/10.1016/j.aca.2016.11.025  

Adapt, move or die – how will tropical coral reef fishes cope with ocean warming?
Habary et al., 2017, Global Change Biology
https://doi.org/10.1111/gcb.13488 

Metabolism in anoxic permeable sediments is dominated by eukaryotic dark fermentation
Bourke et al., 2017, Nature Geoscience
https://doi.org/10.1038/ngeo2843

2016

In situ quantification of ultra-low O2 concentrations in oxygen minimum zones: Application of novel optodes
Larsen et al., Limnology and Oceanography: Methods
https://doi.org/10.1002/lom3.10126

Differences in diet-induced flexibility in morphology and growth in a partially migratory species
Van Leeuwen et al., 2016, Canadian Journal of Fisheries and Aquatic Sciences
https://doi.org/10.1139/cjfas-2015-0300

Influence of Oxygen and Mediators on Laccase-Catalyzed Polymerization of Lignosulfonate
Huber et al., 2016, ACS Sustainable Chemistry & Engineering,
https://doi.org/10.1021/acssuschemeng.6b00692

Let the substrate flow, not the enzyme: Practical immobilization of d-amino acid oxidase in a glass microreactor for effective biocatalytic conversions
Bolivar et al., 2016, Biotechnology and Bioengineering
https://doi.org/10.1002/bit.26011

Intermittent Hypoxia and Prolonged Suboxia Measured In situ in a Marine Sponge
Lavy et al., 2016, Frontiers in Marine Science
https://doi.org/10.3389/fmars.2016.00263  

Effect of elevated carbon dioxide on shoal familiarity and metabolism in a coral reef fish
Nadler et al., 2016, Conservation Physiology
https://doi.org/10.1093/conphys/cow052  

Fabrication of multilayered vascular tissues using microfluidic agarose hydrogel platforms
Kinoshita et al., 2016, Biotechnology Journal
https://doi.org/10.1002/biot.201600083

Low temperature trumps high food availability to determine the distribution of intertidal mussels Perna perna in South Africa
Tagliarolo et al., 2016, Marine Ecology Progress Series
https://doi.org/10.3354/meps11876  

Gill structural change in response to turbidity has no effect on the oxygen uptake of a juvenile sparid fish
Cumming and Herbert, 2016, Conservation Physiology
https://doi.org/10.1093/conphys/cow033  

Biotic Control of Surface pH and Evidence of Light-Induced H+ Pumping and Ca2+-H+ Exchange in a Tropical Crustose Coralline Alga
Hofmann et al., 2016, PLOS One
http://dx.doi.org/10.1371/journal.pone.0159057  

Peeking under the Iron Curtain: Development of a Microcosm for Imaging the Colonization of Steel Surfaces by Mariprofundus sp. Strain DIS-1, an Oxygen-Tolerant Fe-Oxidizing Bacterium
Mumford et al., 2016, Applied and Environmental Microbiology
https://doi.org/10.1128/AEM.01990-16   

Quasi-continuous parallel online scattered light, fluorescence and dissolved oxygen tension measurement combined with monitoring of the oxygen transfer rate in each well of a shaken microtiter plate
Ladner et al., 2016, Microbial Cell Factories
https://doi.org/10.1186/s12934-016-0608-2

New encounters in Arctic waters: a comparison of metabolism and performance of polar cod (Boreogadus saida) and Atlantic cod (Gadus morhua) under ocean acidification and warming
Kunz et al., 2016, Polar Biology
https://doi.org/10.1007/s00300-016-1932-z

Salinity stress from the perspective of the energy-redox axis: Lessons from a marine intertidal flatworm
Rivera-Ingraham et al., 2016, Redox Biology
http://doi.org/10.1016/j.redox.2016.09.012

Respiration activity monitoring system for any individual well of a 48-well microtiter plate
Flitsch et al., 2016, Journal of Biological Engineering
http://doi.org/10.1186/s13036-016-0034-3

Characterization of the monolignol oxidoreductase AtBBE-like protein 15 L182V for biocatalytic applications
Pils et al., 2016, Journal of Molecular Catalysis B: Enzymatic
http://dx.doi.org/10.1016/j.molcatb.2016.10.018

Scavenging dissolved oxygen via acoustic droplet vaporization
Radhakrishnan et al., 2016, Ultrasonics Sonochemistry
http://dx.doi.org/10.1016/j.ultsonch.2016.01.019

Regulation of Intertidal Microphytobenthos Photosynthesis Over a Diel Emersion Period Is Strongly Affected by Diatom Migration Patterns
Cartaxana et al., 2016, Frontiers in Microbiology
http://doi.org/10.3389/fmicb.2016.00872

Oxygen dependence of upper thermal limits in fishes
Ern et al., 2016, Journal of Experimental Biology
http://doi.org/10.1242/jeb.143495      

Evidence for water-mediated mechanisms in coral–algal interactions
Jorissen et al., 2016, Proceedings of the Royal Society B
http://doi.org/10.1098/rspb.2016.1137   

Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm
Stuart et al., 2016, mBio
http://doi.org/10.1128/mBio.00650-16 

Metabolic performance of the coral reef fish Siganus guttatus exposed to combinations of water borne diesel, an anionic surfactant and elevated temperature in Indonesia
Baum et al., 2016, Marine Pollution Bulletin
https://doi.org/10.1016/j.marpolbul.2016.02.078

Body length rather than routine metabolic rate and body condition correlates with activity and risk-taking in juvenile zebrafish Danio rerio
Polverino et al., 2016, Journal of Fish Biology
https://doi.org/10.1111/jfb.13100 

Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus jostii RHA1: A Versatile Oxidative Biocatalyst
Nguyen et al., 2016, ChemBioChem
https://doi.org/10.1002/cbic.201600148 

Methods matter: considering locomotory mode and respirometry technique when estimating metabolic rates of fishes
Rummer et al., 2016, Conservation Physiology
https://doi.org/10.1093/conphys/cow008

Male sexually coercive behaviour drives increased swimming efficiency in female guppies
Killen et al., 2016, Functional Ecology
https://doi.org/10.1111/1365-2435.12527 

Photosynthetic physiology and biomass partitioning in the model diatom Phaeodactylum tricornutum grown in a sinusoidal light regime
Jallet et al., 2016, Algal Research
https://doi.org/10.1016/j.algal.2016.05.014

Taking advantage of adaptations when managing threatened species within variable environments: the case of the dwarf galaxias, Galaxiella pusilla (Teleostei, Galaxiidae)
Coleman et al., 2016, Marine and Freshwater Research
http://dx.doi.org/10.1071/MF15332

Behaviour in a standardized assay, but not metabolic or growth rate, predicts behavioural variation in an adult aquatic top predator Esox lucius in the wild
Laskowski et al., 2016, Journal of Fish Biology
https://doi.org/10.1111/jfb.12933

Biofilm history and oxygen availability interact to affect habitat selection in a marine invertebrate
Lagos et al., 2016, Biofouling
http://dx.doi.org/10.1080/08927014.2016.1178725

Vegetation successfully prevents oxidization of sulfide minerals in mine tailings
Li et al., 2016, Journal of Environmental Management
https://doi.org/10.1016/j.jenvman.2016.04.026

Seeing is believing: metabolism provides insight into threat perception for a prey species of coral reef fish
Hall and Clark, 2016, Animal Behaviour
https://doi.org/10.1016/j.anbehav.2016.03.008

Fluorinated methacrylamide chitosan hydrogels enhance collagen synthesis in wound healing through increased oxygen availability
Patil et al., 2016, Acta Biomaterialia
https://doi.org/10.1016/j.actbio.2016.03.022

Top predators negate the effect of mesopredators on prey physiology
Palacios et al., 2016, Journal of Animal Ecology
https://doi.org/10.1111/1365-2656.12523

Experimental methods in aquatic respirometry: the importance of mixing devices and accounting for background respiration
Rodgers et al., 2016, Journal of Fish Biology
https://doi.org/10.1111/jfb.12848

Limited Capacity for Faster Digestion in Larval Coral Reef Fish at an Elevated Temperature
McLeod and Clark, 2016, PLOS One
http://dx.doi.org/10.1371/journal.pone.0155360

Sources of variation in oxygen consumption of aquatic animals demonstrated by simulated constant oxygen consumption and respirometers of different sizes
Svendsen et al., 2016, Journal of Fish Biology
http://doi.org/10.1111/jfb.12851

Physiological plasticity v. inter-population variability: understanding drivers of hypoxia tolerance in a tropical estuarine fish
Collins et al., 2016, Marine and Freshwater Research
http://dx.doi.org/10.1071/MF15046

Drag Reduction by Bubble-Covered Surfaces Found in PDMS Microchannel through Depressurization
Gao et al., 2016, Langmuir
http://doi.org/10.1021/acs.langmuir.6b01186

Effect of closed v. intermittent-flow respirometry on hypoxia tolerance in the shiner perch Cymatogaster aggregate
Snyder et al., 2016, Journal of Fish Biology
http://doi.org/10.1111/jfb.12837

Effects of Hypoxia on the Physiology of Zebrafish (Danio rerio): Initial Responses, Acclimation and Recovery
Feng et al., 2016, Bulletin of Environmental Contamination and Toxicology
http://doi.org/10.1007/s00128-015-1668-4

Physiological Regulation of Valve-Opening Degree Enables Mussels Mytilus edulis to Overcome Starvation Periods by Reducing the Oxygen Uptake
Tang and Riisgård, 2016, Open Journal of Marine Science
http://dx.doi.org/10.4236/ojms.2016.63029

Easy to use and reliable technique for online dissolved oxygen tension measurement in shake flasks using infrared fluorescent oxygen-sensitive nanoparticles
Flitsch et al., 2016, Microbial Cell Factories
http://doi.org/10.1186/s12934-016-0444-4

Physiological constraints to climate warming in fish follow principles of plastic floors and concrete ceilings
Sandblom et al., 2016, Nature Communications
http://doi.org/10.1038/ncomms11447

Flow and Coral Morphology Control Coral Surface pH: Implications for the Effects of Ocean Acidification
Chan et al., 2016, Frontiers in Marine Science
https://doi.org/10.3389/fmars.2016.00010

2015

Quasi-simultaneous mapping of local current density, pH and dissolved O2
Taryba et al., 2015, Electroanalysis
https://doi.org/10.1002/elan.201500286  

Genomics and Ecophysiology of Heterotrophic Nitrogen-Fixing Bacteria Isolated from Estuarine Surface Water
Bentzon-Tilia et al., 2015, mBio
https://doi.org/10.1128/mBio.00929-15

Evaluation of wavelength selective photovoltaic panels on microalgae growth and photosynthetic efficiency
Detweiler et al., 2015, Algal Research
https://doi.org/10.1016/j.algal.2015.03.003 

Living in a risky world: the onset and ontogeny of an integrated antipredator phenotype in a coral reef fish
Ferrari et al., 2015, Scientific Reports
https://dx.doi.org/10.1038%2Fsrep15537

Vertical distribution of algal productivity in open pond raceways
Murphy et al., 2015, Algal Research
https://doi.org/10.1016/j.algal.2015.07.003

The Physiological Response of Two Green Calcifying Algae from the Great Barrier Reef towards High Dissolved Inorganic and Organic Carbon (DIC and DOC) Availability
Meyer et al., 2015, PLOS One
https://doi.org/10.1371/journal.pone.0133596

RNA Futile Cycling in Model Persisters Derived from MazF Accumulation
Mok et al., 2015, mBio
https://doi.org/10.1128/mBio.01588-15

Occurrence of Priming in the Degradation of Lignocellulose in Marine Sediments
Gontikaki et al. 2015, PLOS One
https://doi.org/10.1371/journal.pone.0143917

A sediment core incubation method to measure the flux of dissolved organic carbon between sediment and water
Dadi et al, 2015, Journal of Soils and Sediments
https://doi.org/10.1007/s11368-015-1213-4

Vulnerability of individual fish to capture by trawling is influenced by capacity for anaerobic metabolism
Killen et al., 2015, Proceedings of the Royal Society B
http://doi.org/10.1098/rspb.2015.0603

Microbial Iron Oxidation in the Arctic Tundra and Its Implications for Biogeochemical Cycling
Emerson et al., 2015, Applied and Environmental Microbiology
http://doi.org/10.1128/AEM.02832-15   

Microsensor studies on Padina from a natural CO2 seep: implications of morphology on acclimation to low pH
Hofmann et al., 2015, Journal of Phycology
http://doi.org/10.1111/jpy.12347   

Physiological Response of the Hard Coral Pocillopora verrucosa from Lombok, Indonesia, to Two Common Pollutants in Combination with High Temperature
Kegler et al. 2015, PLOS One
http://dx.doi.org/10.1371/journal.pone.0142744

Ocean warming and acidification modulate energy budget and gill ion regulatory mechanisms in Atlantic cod (Gadus morhua)
Kreiss et al. 2015, Journal of Comparative Physiology B
https://doi.org/10.1007/s00360-015-0923-7

Metabolic cold adaptation and aerobic performance of blue mussels (Mytilus edulis) along a temperature gradient into the High Arctic region
Thyrring et al. 2015, Marine Biology
https://doi.org/10.1007/s00227-014-2575-7

Adaptation of the brine shrimp Artemia salina (Branchiopoda: Anostraca) to filter-feeding: effects of body size and temperature on filtration and respiration rates
Riisgård et al., 2015, Journal of Crustacean Biology
https://doi.org/10.1163/1937240X-00002362

Online monitoring of dissolved oxygen tension in microtiter plates based on infrared fluorescent oxygen-sensitive nanoparticles
Ladner et al., 2015, Microbial Cell Factories
https://doi.org/10.1186/s12934-015-0347-9

Porous membrane as a means of gas and nutrient exchange in a tubular photobioreactor
Ojanen et al. 2015, Journal of Applied Phycology
https://doi.org/10.1007/s10811-014-0397-0

Experimental manipulations of tissue oxygen supply do not affect warming tolerance of European perch
Brijs et al., 2015, Journal of Experimental Biology
https://doi.org/10.1242/jeb.121889

The formation of aggregates in coral reef waters under elevated concentrations of dissolved inorganic and organic carbon: A mesocosm approach
Cárdenas et al., 2015, Marine Chemistry
https://doi.org/10.1016/j.marchem.2015.04.002

Efficient gas–liquid contact using microfluidic membrane devices with staggered herringbone mixers
Femmer et al., 2015, Lab on a Chip
https://doi.org/10.1039/C5LC00428D

Three-dimensional structure and cyanobacterial activity within a desert biological soil crust
Raanan et al., 2015, Environmental Microbiology
https://doi.org/10.1111/1462-2920.12859

Photoacoustic lifetime imaging for direct in vivo tissue oxygen monitoring
Shao and Ashkenazi, 2015, Journal of Biomedical Optics
https://doi.org/10.1117/1.JBO.20.3.036004

Laccase mediated oxidation of industrial lignins: Is oxygen limiting?
Ortner et al., 2015, Process Biochemistry
https://doi.org/10.1016/j.procbio.2015.05.003

Increased gastrointestinal blood flow: An essential circulatory modification for euryhaline rainbow trout (Oncorhynchus mykiss) migrating to sea
Brijs et al., 2015, Scientific Reports
https://dx.doi.org/10.1038%2Fsrep10430

Not so monofunctional—a case of thermostable Thermobifida fusca catalase with peroxidase activity
Loncar and Fraaije, 2015, Applied Microbiology and Biotechnology
https://doi.org/10.1007/s00253-014-6060-5

An Assessment of the Precision and Confidence of Aquatic Eddy Correlation Measurements
Donis et al., 2015, Journal of Atmospheric and Oceanic Technology
https://doi.org/10.1175/JTECH-D-14-00089.1

Pharmaceuticals and personal care products alter growth and function in lentic biofilms
Shaw et al., 2015, Environmental Chemistry
https://doi.org/10.1071/EN14141

Futile cycling increases sensitivity toward oxidative stress in Escherichia coli
Adolfsen and Brynildsen, 2015, Metabolic Engineering
https://doi.org/10.1016/j.ymben.2015.02.006

Accumulation of Basic Amino Acids at Mitochondria Dictates the Cytotoxicity of Aberrant Ubiquitin
Braun et al., 2015, Cell Reports
http://dx.doi.org/10.1016/j.celrep.2015.02.009

O2 mass transfer in an oscillatory flow reactor provided with smooth periodic constrictions. Individual characterization of kL and a
Ferreira et al., 2015, Chemical Engineering Journal
https://doi.org/10.1016/j.cej.2014.09.125

Flexibility in metabolic rate confers a growth advantage under changing food availability
Auer et al., 2015, Journal of Animal Ecology
https://doi.org/10.1111/1365-2656.12384

Oxygen metabolism and pH in coastal ecosystems: Eddy Covariance Hydrogen ion and Oxygen Exchange System (ECHOES)
Long et al., 2015, Limnology and Oceanography: Methods
https://doi.org/10.1002/lom3.10038

Aquatic Eddy Correlation: Quantifying the Artificial Flux Caused by Stirring-Sensitive O2 Sensors
Holtappels et al., 2015, PLoS ONE
https://doi.org/10.1371/journal.pone.0116564

Decreased light availability can amplify negative impacts of ocean acidification on calcifying coral reef organisms
Vogel et al. 2015, Marine Ecology Progress Series
https://doi.org/10.3354/meps11088

Physiological and ecological performance differs in four coral taxa at a volcanic carbon dioxide seep
Strahl et al., 2015, Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology
https://doi.org/10.1016/j.cbpa.2015.02.018

Novel use of a micro-optode in overcoming the negative influence of the amperometric micro-probe on localized corrosion measurements
Taryba et al., 2015, Corrosion Science
https://doi.org/10.1016/j.corsci.2015.02.037

The effect of temperature and ration size on specific dynamic action and production performance in juvenile hapuku (Polyprion oxygeneios)
Khan et al., 2015, Aquaculture
https://doi.org/10.1016/j.aquaculture.2014.11.024

The effect of temperature and body size on metabolic scope of activity in juvenile Atlantic cod Gadus morhua L
Tirsgaard et al., 2015, Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology
https://doi.org/10.1016/j.cbpa.2014.09.033

2014

Refuge-Seeking Impairments Mirror Metabolic Recovery Following Fisheries-Related Stressors in the Spanish Flag Snapper (Lutjanus carponotatus) on the Great Barrier Reef
Cooke et al., 2014, Physiological and Biochemical Zoology
https://doi.org/10.1086/671166

Composition, Buoyancy Regulation and Fate of Ice Algal Aggregates in the Central Arctic Ocean
Fernández-Méndez et al., 2014, PLOS One
https://doi.org/10.1371/journal.pone.0107452

Comparative growth and metabolism of gelatinous colonies of three cyanobacteria, Nostoc commune, Nostoc pruniforme and Nostoc zetterstedtii, at different temperatures
Møller et al., 2014, Freshwater Biology
https://doi.org/10.1111/fwb.12421

Alkalinity production in intertidal sands intensified by lugworm bioirrigation
Rao et al., 2014, Estuarine, Coastal and Shelf Science
https://doi.org/10.1016/j.ecss.2014.06.006 

Influence of buried Ulva lactuca on denitrification in permeable sediments
Bourke et al., 2014, Marine Ecology Progress Series
https://doi.org/10.3354/meps10611

Eyeless Mexican Cavefish Save Energy by Eliminating the Circadian Rhythm in Metabolism
Moran et al., 2014, PLOS One
https://doi.org/10.1371/journal.pone.0107877 

Physical controls of oxygen fluxes at pelagic and benthic oxyclines in a lake
Kreling et al., 20k14, Limnology and Oceanography
https://doi.org/10.4319/lo.2014.59.5.1637   

Empirical Evidence Reveals Seasonally Dependent Reduction in Nitrification in Coastal Sediments Subjected to Near Future Ocean Acidification
Braeckman et al., 2014, PLOS One
https://doi.org/10.1371/journal.pone.0108153   

Ocean acidification rapidly reduces dinitrogen fixation associated with the hermatypic coral Seriatopora hystrix
Rädecker et al., 2014, Marine Ecology Progress Series
https://doi.org/10.3354/meps10912

All puffed out: do pufferfish hold their breath while inflated?
McGee and Clark, 2014, Biology Letters
https://doi.org/10.1098/rsbl.2014.0823

Spectral Effects on Symbiodinium Photobiology Studied with a Programmable Light Engine
Wangpraseurt et al., 2014, PLOS One
https://doi.org/10.1371/journal.pone.0112809

The energetic cost of foraging explains growth anomalies in tadpoles exposed to predators
Barry, M.J., 2014, Physiological and Biochemical Zoology
https://doi.org/10.1086/678042

A product of its environment: the epaulette shark (Hemiscyllium ocellatum) exhibits physiological tolerance to elevated environmental CO2
Heinrich et al., 2014, Conservation Physiology
https://doi.org/10.1093/conphys/cou047

Oxygen-Dependent Control of Respiratory Nitrate Reduction in Mycelium of Streptomyces coelicolor A3(2)
Fischer et al., 2014, Journal of Bacteriology
https://doi.org/10.1128/JB.02202-14

A respiratory nitrate reductase active exclusively in resting spores of the obligate aerobe Streptomyces coelicolor A3(2)
Fischer et al., 2014, Molecular Microbiology
https://doi.org/10.1111/mmi.12344

Growth trajectory influences temperature preference in fish through an effect on metabolic rate
Killen, S., 2014, Journal of Animal Ecology
https://doi.org/10.1111/1365-2656.12244

Colored ceramic foams with tailored pore size and surface functionalization used as spawning plates for fish breeding
Kroll et al., 2014, Ceramics International
https://doi.org/10.1016/j.ceramint.2014.07.100

Aerobic scope predicts dominance during early life in a tropical damselfish
Killen et al., 2014, Functional Ecology
https://doi.org/10.1111/1365-2435.12296

European sea bass, Dicentrarchus labrax, in a changing ocean
Pope et al., 2014, Biogeosciences
https://doi.org/10.5194/bg-11-2519-2014

Marine rust tubercles harbour iron corroding archaea and sulphate reducing bacteria
Usher et al., 2014, Corrosion Science
https://doi.org/10.1016/j.corsci.2014.02.014

Investigation and correction of the interference of ethanol, sugar and phenols on dissolved oxygen measurement in wine
Alamo-Sanza et al., 2014, Analytica Chimica Acta
https://doi.org/10.1016/j.aca.2013.11.053

Bioresponsive polymers for the detection of bacterial contaminations in platelet concentrates
Gamerith et al., 2014, New Biotechnology
https://doi.org/10.1016/j.nbt.2013.11.001

Life on the edge: thermal optima for aerobic scope of equatorial reef fishes are close to current day temperatures
Rummer et al., 2014, Global Change Biology
https://doi.org/10.1111/gcb.12455

The effect of diel temperature and light cycles on the growth of Nannochloropsis oculata in a photobioreactor matrix
Tamburic et al., 2014, PLOS One
https://doi.org/10.1371/journal.pone.0086047

Radiative energy budget reveals high photosynthetic efficiency in symbiont-bearing corals
Brodersen et al., 2014, Journal of the Royal Society Interface
https://doi.org/10.1098/rsif.2013.0997

The isotope effect of denitrification in permeable sediments
Kessler et al., 2014, Geochimica et Cosmochimica Acta
https://doi.org/10.1016/j.gca.2014.02.029

Discovery and characterization of a 5-Hydroxymethylfurfural oxidase from Methylovorus sp. Strain MP688
Dijkman and Fraaije, 2014, Applied and Environmental Microbiology
https://doi.org/10.1128/AEM.03740-13

Amperometric glucose sensing with polyaniline/poly(acrylic acid) composite film bearing covalently-immobilized glucose oxidase: A novel method combining enzymatic glucose oxidation and cathodic O2 reduction
Homma et al., 2014, Journal of Electroanalytical Chemistry
https://doi.org/10.1016/j.jelechem.2013.11.009

Cultivation and isolation of N2-fixing bacteria from suboxic waters in the Baltic Sea
Bentzon-Tilia et al., 2014, FEMS Microbiology Ecology
https://doi.org/10.1111/1574-6941.12304

Coenzyme regeneration catalyzed by NADH oxidase from Lactococcus lactis
Sudar et al., 2014, Biochemical Engineering Journal
https://doi.org/10.1016/j.bej.2014.04.001

Temporary storage or permanent removal? The division of nitrogen between biotic assimilation and denitrification in stormwater biofiltration systems
Payne et al., 2014, PLOS One
https://doi.org/10.1371/journal.pone.0090890

Increased rates of dissimilatory nitrate reduction to ammonium (DNRA) under oxic conditions in a periodically hypoxic estuary
Roberts et al., 2014, Geochimica et Cosmochimica Acta
https://doi.org/10.1016/j.gca.2014.02.042

Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus
Ceja-Navarro et al., 2014, ISME Journal
https://doi.org/10.1038/ismej.2013.134

Aerobic scope does not predict the performance of a tropical eurythermal fish at elevated temperatures
Norin et al., 2014, Journal of Experimental Biology
https://doi.org/10.1242/jeb.089755

2013

Oxygen-dependent niche formation of a pyrite-dependent acidophilic consortium built by archaea and bacteria
Ziegler et al., 2013, The ISME Journal
https://doi.org/10.1038/ismej.2013.64

Climate change and the performance of larval coral reef fishes: the interaction between temperature and food availability
McLeod et al., 2013, Conservation Physiology
https://doi.org/10.1093/conphys/cot024

Species-specific effects of near-future CO2 on the respiratory performance of two tropical prey fish and their predator
Couturier et al., 2013, Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology
https://doi.org/10.1016/j.cbpa.2013.07.025

In vivo photoacoustic lifetime imaging of tumor hypoxia in small animals
Shao et al., 2013, Journal of Biomedical Optics
https://doi.org/10.1117/1.JBO.18.7.076019

Enzyme-based online monitoring and measurement of antioxidant activity using an optical oxygen sensor coupled to an HPLC system
Quaranta et al., 2013, Analytical and Bioanalytical Chemistry
https://doi.org/10.1007/s00216-012-6651-x

The kinetics of denitrification in permeable sediments
Evrard et al., 2013, Biogeochemistry
https://doi.org/10.1007/s10533-012-9789-x

The biomechanical effect of corneal collagen cross-linking (CXL) with riboflavin and UV-A is oxygen dependent
Richoz et al., 2013, Translational Vision Science & Technology
http://dx.doi.org/10.1167/tvst.2.7.6

Elevated CO2 enhances aerobic scope of a coral reef fish
Rummer et al., 2013, Conservation Physiology
https://doi.org/10.1093/conphys/cot023

Hypoxia tolerance is conserved across genetically distinct sub-populations of an iconic, tropical Australian teleost (Lates calcarifer)
Collins et al., 2013, Conservation Physiology
https://doi.org/10.1093/conphys/cot029

Finding the best estimates of metabolic rates in a coral reef fish
Roche et al., 2013, Journal of Experimental Biology
https://doi.org/10.1242/jeb.082925

2012

Biofilm growth and near-infrared radiation-driven photosynthesis of the chlorophyll d-containing cyanobacterium Acaryochloris marina
Behrendt et al., 2012, Appl Environ Microbiol Vol 78 (11): 3896-3904